| Gene Information | |
|---|---|
| Gene Name | YBX1 |
| Organism | Homo sapiens (Human) |
| Gene Length | 324 |
| Protein Names | Y-box-binding protein 1 (YB-1) (CCAAT-binding transcription factor I subunit A) (CBF-A) (DNA-binding protein B) (DBPB) (Enhancer factor I subunit A) (EFI-A) (Nuclease-sensitive element-binding protein 1) (Y-box transcription factor) |
| Target Name | NA |
| Target Type | NA |
| Gene Age | 680 ( ENSG00000065978 ) |
| Evolutionary Stage | Eumetazoa |
| AlphaFoldDB | P67809 |
| Gene Card | YBX1 |
| Uniprot ID | P67809 |
| Pfam | PF00313 |
| In ASD | no |
| Allosteric Prediction | no (-0.183287566) |
| Ortholog in Animals | Alpaca_ YBX1 ( ortholog_one2one ) GuineaPig_ YBX1 ( ortholog_one2one ) Macaque_ YBX1 ( ortholog_one2many ) Mouse_ Ybx1 ( ortholog_one2one ) Rat_ Ybx1-ps3 ( ortholog_one2many ) Rat_ Ybx1 ( ortholog_one2many ) |
| Ohnologs | YBX2 |
| Paralogs | YBX2, LIN28A, LIN28B, YBX3 |
| Tissue | NA |
| Tissue Specificity | NA |
| Pharmacological Animal Models | NA |
| Gene Ontology (biological process) |
|
| Gene Ontology (cellular component) |
|
| Gene Ontology (molecular function) |
|
| PDB | 1H95 (NMR - ) 5YTS (X-ray 1.77A ) 5YTT (X-ray 1.60A ) 5YTV (X-ray 1.70A ) 5YTX (X-ray 1.55A ) 6A6L (X-ray 1.78A ) 6KTC (X-ray 2.01A ) 6KUG (X-ray 1.40A ) 6LMR (NMR - ) 6LMS (NMR - ) |
| DBSNP | NA |
| Subcellular location [CC] | Cytoplasm {ECO:0000269|PubMed:12604611, ECO:0000269|PubMed:14718551, ECO:0000269|PubMed:15806160}. Nucleus {ECO:0000269|PubMed:12604611, ECO:0000269|PubMed:14718551, ECO:0000269|PubMed:15806160}. Cytoplasmic granule {ECO:0000269|PubMed:17289661, ECO:0000269|PubMed:18335541, ECO:0000269|PubMed:19029303, ECO:0000269|PubMed:25229427}. Secreted {ECO:0000269|PubMed:19483673}. Secreted, extracellular exosome {ECO:0000269|PubMed:27559612, ECO:0000269|PubMed:28341602}. Note=Predominantly cytoplasmic in proliferating cells (PubMed:12604611). Cytotoxic stress and DNA damage enhance translocation to the nucleus (PubMed:14718551). Localized in cytoplasmic mRNP granules containing untranslated mRNAs (PubMed:25229427). Shuttles between nucleus and cytoplasm (PubMed:25229427). Localized with DDX1, MBNL1 and TIAL1 in stress granules upon stress (PubMed:18335541). Secreted by mesangial and monocytic cells after inflammatory challenges (PubMed:19483673). {ECO:0000269|PubMed:12604611, ECO:0000269|PubMed:14718551, ECO:0000269|PubMed:18335541, ECO:0000269|PubMed:19483673, ECO:0000269|PubMed:25229427}. |
| Mouse PG classification | NA |
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