| Gene Information | |
|---|---|
| Gene Name | RBM39 |
| Organism | Homo sapiens (Human) |
| Gene Length | 530 |
| Protein Names | RNA-binding protein 39 (CAPER alpha) (CAPERalpha) (Hepatocellular carcinoma protein 1) (RNA-binding motif protein 39) (RNA-binding region-containing protein 2) (Splicing factor HCC1) |
| Target Name | NA |
| Target Type | NA |
| Gene Age | 645 ( ENSG00000131051 ) |
| Evolutionary Stage | Euk+Bac |
| AlphaFoldDB | Q14498 |
| Gene Card | RBM39 |
| Uniprot ID | Q14498 |
| Pfam | PF15519; PF00076 |
| In ASD | no |
| Allosteric Prediction | no (-0.79981273) |
| Ortholog in Animals | Alpaca_ RBM39 ( ortholog_one2one ) Dog_ RBM39 ( ortholog_one2one ) GuineaPig_ RBM39 ( ortholog_one2one ) Macaque_ RBM39 ( ortholog_one2one ) Mouse_ Rbm39 ( ortholog_one2one ) Pig_ RBM39 ( ortholog_one2one ) Rat_ Rbm39 ( ortholog_one2one ) Rabbit_ RBM39 ( ortholog_one2one ) |
| Ohnologs | RBM23 |
| Paralogs | RBM46, RBM19, MSI2, HNRNPA1L2, HNRNPA1L3, HNRNPA1, A1CF, RBM23, TIAL1, DAZAP1, RBMX, RBMXL1, HNRNPA0, HNRNPAB, CIRBP, RBM3, HNRNPA3, RBMY1D, RBMY1B, RBMY1A1, RBMY1J, RBMY1F, RBMY1E, MSI1, RBM47, TRNAU1AP, HNRNPA2B1, RBMXL2, RBMXL3, RBM4, RBM4B, HNRNPD, DND1, NCL, HNRNPDL, TIA1 |
| Tissue | NA |
| Tissue Specificity | Widely expressed. Highly expressed in pancreas, skeletal muscle, lung and brain (PubMed:8227358). Expressed at intermediate level in kidney, liver and heart (PubMed:8227358). {ECO:0000269|PubMed:8227358}. |
| Pharmacological Animal Models | NULL(Chimpanzee);0.011940(Mouse);0.001000(Rat);0.038298(Rabbit) |
| Gene Ontology (biological process) |
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| Gene Ontology (cellular component) |
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| Gene Ontology (molecular function) |
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| PDB | 2JRS (NMR - ) 2MHN (NMR - ) 4OO6 (X-ray 2.70A ) 4OZ0 (X-ray 2.20A ) 4OZ1 (X-ray 1.74A ) 4YUD (X-ray 1.28A ) 6PAI (X-ray 2.90A ) 6Q0R (X-ray 2.90A ) 6Q0V (X-ray 2.90A ) 6Q0W (X-ray 2.90A ) 6SJ7 (EM 3.54A ) 6UD7 (X-ray 2.30A ) 6UE5 (X-ray 2.61A ) |
| DBSNP | rs1803701 |
| Subcellular location [CC] | Nucleus speckle {ECO:0000269|PubMed:8227358}. Note=Concentrated in nuclear speckles (PubMed:8227358). Colocalizes with the core spliceosomal snRNP proteins (PubMed:8227358). {ECO:0000269|PubMed:8227358}. |
| Mouse PG classification | NA |
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