| Gene Information | |
|---|---|
| Gene Name | COL13A1 |
| Organism | Homo sapiens (Human) |
| Gene Length | 717 |
| Protein Names | Collagen alpha-1(XIII) chain (COLXIIIA1) |
| Target Name | NA |
| Target Type | NA |
| Gene Age | 454 ( ENSG00000197467 ) |
| Evolutionary Stage | Eumetazoa |
| AlphaFoldDB | Q5TAT6 |
| Gene Card | COL13A1 |
| Uniprot ID | Q5TAT6 |
| Pfam | PF01391 |
| In ASD | no |
| Allosteric Prediction | no (-0.852669844) |
| Ortholog in Animals | Alpaca_ COL13A1 ( ortholog_one2one ) Dog_ COL13A1 ( ortholog_one2one ) GuineaPig_ COL13A1 ( ortholog_one2one ) Macaque_ COL13A1 ( ortholog_one2one ) Mouse_ Col13a1 ( ortholog_one2one ) Pig_ COL13A1 ( ortholog_one2one ) Rat_ Col13a1 ( ortholog_one2one ) |
| Ohnologs | COL23A1 |
| Paralogs | COL7A1, COL9A2, COLQ, COL4A1, COL17A1, COL1A1, EDA, COL22A1, COL11A1, COL15A1, COL9A3, COL26A1, COL16A1, COL5A1, COL25A1, COL3A1, COL6A2, COL5A3, COL27A1, COL1A2, COL24A1, COL5A2, COL18A1, COL9A1, COL23A1, COL2A1, COL4A2, COL20A1, COL4A4, COL4A6, COL28A1, COL11A2, COL21A1, COL6A1, EMID1, COL4A5, COL4A3 |
| Tissue | cerebellar.hemisphere, cerebellum |
| Tissue Specificity | Widely expressed in both fetal and adult ocular tissues (at protein level). In the eye, expression is accentuated in the ciliary muscle, optic nerve and the neural retina. In early placenta, localized to fibroblastoid stromal cells of the placental villi, to endothelial cells of developing capillaries and to cells of the cytotrophoblastic columns. Also detected in large decidual cells of the decidual membrane and to stromal cells of the gestational endometrium, but not in the epithelial cells in the endometrial glands. Isoform 10: Expressed in muscle (PubMed:26626625). {ECO:0000269|PubMed:10865988, ECO:0000269|PubMed:26626625, ECO:0000269|PubMed:8246446}. |
| Pharmacological Animal Models | NA |
| Gene Ontology (biological process) |
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| Gene Ontology (cellular component) |
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| Gene Ontology (molecular function) |
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| PDB | NA |
| DBSNP | rs1061954 |
| Subcellular location [CC] | Cell membrane {ECO:0000269|PubMed:11013208}; Single-pass type II membrane protein {ECO:0000269|PubMed:11013208}. Postsynaptic cell membrane {ECO:0000269|PubMed:26626625}. |
| Mouse PG classification | LPG |
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